Studies in Mycology (2009) 64, 1-15

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C.L. Schoch, P.W. Crous, J.Z. Groenewald, E.W.A. Boehm, T.I. Burgess, J. de Gruyter, G.S. de Hoog, L.J. Dixon, M. Grube, C. Gueidan, Y. Harada, S. Hatakeyama, K. Hirayama, T. Hosoya, S.M. Huhndorf, K.D. Hyde, E.B.G. Jones, J. Kohlmeyer, Å. Kruys, Y.M. Li, R. Lücking, H.T. Lumbsch, L. Marvanová, J.S. Mbatchou, A.H. McVay, A.N. Miller, G.K. Mugambi, L. Muggia, M.P. Nelsen, P. Nelson, C A. Owensby, A.J.L. Phillips, S. Phongpaichit, S.B. Pointing, V. Pujade-Renaud, H.A. Raja, E. Rivas Plata, B. Robbertse, C. Ruibal, J. Sakayaroj, T. Sano, L. Selbmann, C.A. Shearer, T. Shirouzu, B. Slippers, S. Suetrong, K. Tanaka, B. Volkmann-Kohlmeyer, M.J. Wingfield, A.R. Wood, J.H.C. Woudenberg, H. Yonezawa, Y. Zhang and J.W. Spatafora (2009)
A class-wide phylogenetic assessment of Dothideomycetes
Studies in Mycology 64, 1-15
Abstract: We present a comprehensive phylogeny derived from 5 genes, nucSSU, nucLSU rDNA, TEF1, RPB1 and RPB2, for 356 isolates and 41 families (six newly described in this volume) in Dothideomycetes. All currently accepted orders in the class are represented for the first time in addition to numerous previously unplaced lineages. Subclass Pleosporomycetidae is expanded to include the aquatic order Jahnulales. An ancestral reconstruction of basic nutritional modes supports numerous transitions from saprobic life histories to plant associated and lichenised modes and a transition from terrestrial to aquatic habitats are confirmed. Finally, a genomic comparison of 6 dothideomycete genomes with other fungi finds a high level of unique protein associated with the class, supporting its delineation as a separate taxon.
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Database assignments for author(s): Conrad L. Schoch, Pedro W. Crous, Michael J. Wingfield, Bernard Slippers, Johannes Z. Groenewald, Treena Burgess

Research topic(s) for pests/diseases/weeds:
molecular biology - genes

Pest and/or beneficial records:

Beneficial Pest/Disease/Weed Crop/Product Country Quarant.

Venturia inaequalis
Parastagonospora nodorum
Zymoseptoria tritici
Phyllosticta citricarpa
Neocamarosporium betae
Alternaria alternata
Pyrenophora tritici-repentis
Stagonosporopsis cucurbitacearum
Bipolaris sorokiniana
Bipolaris maydis
Macrophomina phaseolina
Pseudocercospora griseola
Aureobasidium pullulans
Parastagonospora avenae
Ascochyta pisi
Cercospora beticola
Boeremia exigua
Corynespora cassiicola
Diplodia mutila
Botryosphaeria dothidea
Ophiosphaerella herpotricha
Elsinoë phaseoli
Prosthemium betulinum
Cladosporium cladosporioides
Kabatiella caulivora
Dothistroma septosporum
Apiosporina morbosa
Catenulostroma elginense
Neovaginatispora fuckelii
Nothophaeocryptopus gaeumannii
Sydowia polyspora
Aglaospora profusa
Uwebraunia dekkeri
Teratosphaeria cryptica
Schizothyrium pomi
Phyllosticta ampelicida
Pseudocercospora epispermogonia
Neofusicoccum ribis
Suberoteratosphaeria suberosa
Venturia populina
Didymella glomerata
Ramularia endophylla
Uwebraunia commune
Pseudocercospora vitis
Pallidocercospora heimii
Elsinoë veneta
Spencermartinsia viticola
Cladosporium iridis
Stemphylium vesicarium
Cladosporium herbarum