Archives of Virology (2014) 159, 1873-1882

Arvind Varsani, Darren P. Martin, Jesús Navas-Castillo, Enrique Moriones, Cecilia Hernández-Zepeda, Ali Idris, F. Murilo Zerbini and Judith K. Brown (2014)
Revisiting the classification of curtoviruses based on genome-wide pairwise identity
Archives of Virology 159 (7), 1873-1882
Abstract: Members of the genus Curtovirus (family Geminiviridae) are important pathogens of many wild and cultivated plant species. Until recently, relatively few full curtovirus genomes have been characterised. However, with the 19 full genome sequences now available in public databases, we revisit the proposed curtovirus species and strain classification criteria. Using pairwise identities coupled with phylogenetic evidence, revised species and strain demarcation guidelines have been instituted. Specifically, we have established 77 % genome-wide pairwise identity as a species demarcation threshold and 94 % genome-wide pairwise identity as a strain demarcation threshold. Hence, whereas curtovirus sequences with >77 % genome-wide pairwise identity would be classified as belonging to the same species, those sharing >94 % identity would be classified as belonging to the same strain. We provide step-by-step guidelines to facilitate the classification of newly discovered curtovirus full genome sequences and a set of defined criteria for naming new species and strains. The revision yields three curtovirus species: Beet curly top virus (BCTV), Spinach severe curly top virus (SpSCTV) and Horseradish curly top virus (HrCTV).
(The abstract is excluded from the Creative Commons licence and has been copied with permission by the publisher.)
Link to article at publishers website
Database assignments for author(s): Judith K. Brown, F. Murilo Zerbini, Darren P. Martin, Jesús Navas-Castillo, Ali M. Idris

Research topic(s) for pests/diseases/weeds:
identification/taxonomy
molecular biology - genes

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Pest and/or beneficial records:

Beneficial	Pest/Disease/Weed	Crop/Product	Country	Quarant.
	Beet curly top virus
	Horseradish curly top virus
	Spinach severe curly top virus