Ralf Koebnik

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Publications of Ralf Koebnik (31 listed):

PLoS ONE (2020) 15 (4 - e0232115)
Martine Bangratz, Issa Wonni, Kossi Kini, Moussa Sondo, Christophe Brugidou, Gilles Béna, Fatoumata Gnacko, Mariam Barro, Ralf Koebnik, Drissa Silué and Charlotte Tollenaere (2020)
Design of a new multiplex PCR assay for rice pathogenic bacteria detection and its application to infer disease incidence and detect co-infection in rice fields in Burkina Faso

Plant Disease (2020) 104, 13-15
Verónica Roman-Reyna, Emily K. Luna, Céline Pesce, Taca Vancheva, Christine Chang, Janet Ziegle, Claude Bragard, Ralf Koebnik, Jillian M. Lang, Jan E. Leach and Jonathan M. Jacobs (2020)
Genome resource of barley bacterial blight and leaf streak pathogen Xanthomonas translucens pv. translucens strain UPB886

Plant Disease (2020) 104, 1011-1012
Stephen P. Cohen, Emily K. Luna, Jillian M. Lang, Janet Ziegle, Christine Chang, Jan E. Leach, Marion Fischer Le-Saux, Perrine Portier, Ralf Koebnik and Jonathan M. Jacobs (2020)
High-quality genome resource of Xanthomonas hyacinthi generated via long-read sequencing

Journal of General Plant Pathology (2019) 85, 424-427
Kossi Kini, Rachelle Dossa, Bernadin Dossou, Mariame Mariko, Ralf Koebnik and Drissa Silué (2019)
A semi-selective medium to isolate and identify bacteria of the genus Pantoea

Phytopathology (2019) 109, 172-174
R.P.P. Almeida, L. De La Fuente, R. Koebnik, J.R.S. Lopes, S. Parnell and H. Scherm (2019)
Addressing the new global threat of Xylella fastidiosa

Phytopathology (2019) 109, 859-869
Leidy Rache, Laurence Blondin, Carolina Flores, Cesar Trujillo, Boris Szurek, Silvia Restrepo, Ralf Koebnik, Adriana Bernal and Christian Vernière (2019)
An optimized microsatellite scheme for assessing populations of Xanthomonas phaseoli pv. manihotis

Applied and Environmental Microbiology (2019) 85 (20 - e01518-19)
Moein Khojasteh, S. Mohsen Taghavi, Pejman Khodaygan, Habiballah Hamzehzarghani, Gongyou Chen, Claude Bragard, Ralf Koebnik and Ebrahim Osdaghi (2019)
Molecular typing reveals high genetic diversity of Xanthomonas translucens strains infecting small-grain cereals in Iran

Plant Disease (2019) 103, p. 2940 (Klass et al.)
T.L. Klass, J.J. Long, J.A. Summers, V. Roman-Reyna, R. Koebnik, J.M. Jacobs and F. Peduto Hand (2019)
First report of bacterial blight of peony caused by Xanthomonas hortorum in Ohio

Plant Pathology (2018) 67, 1601-1611
E. Osdaghi, S.M. Taghavi, R. Koebnik and J.R. Lamichhane (2018)
Multilocus sequence analysis reveals a novel phylogroup of Xanthomonas euvesicatoria pv. perforans causing bacterial spot of tomato in Iran

The Plant Pathology Journal (2018) 34, 1-10
Tanahiri García-González, Hilda Karina Sáenz-Hidalgo, Hilda Victoria Silva-Rojas, Carlos Morales-Nieto, Taca Vancheva, Ralf Koebnik and Graciela Dolores Avila-Quezada (2018)
Enterobacter cloacae, an emerging plant-pathogenic bacterium affecting chili pepper seedlings

Plant Pathology (2018) 67, 957-970
E. Osdaghi, M. Ansari, S.M. Taghavi, S. Zarei, R. Koebnik and J.R. Lamichhane (2018)
Pathogenicity and phylogenetic analysis of Clavibacter michiganensis strains associated with tomato plants in Iran

Plant Biotechnology Journal (2017) 15, 306-317
Servane Blanvillain-Baufumé, Maik Reschke, Montserrat Solé, Florence Auguy, Hinda Doucoure, Boris Szurek, Donaldo Meynard, Murielle Portefaix, Sébastien Cunnac, Emmanuel Guiderdoni, Jens Boch and Ralf Koebnik (2017)
Targeted promoter editing for rice resistance to Xanthomonas oryzae pv. oryzae reveals differential activities for SWEET14-inducing TAL effectors

Phytopathology (2017) 107, 519-527
Paul A. Langlois, Jacob Snelling, John P. Hamilton, Claude Bragard, Ralf Koebnik, Valérie Verdier, Lindsay R. Triplett, Jochen Blom, Ned A. Tisserat and Jan E. Leach (2017)
Characterization of the Xanthomonas translucens complex using draft genomes, comparative genomics, phylogenetic analysis, and diagnostic LAMP assays

The Plant Journal (2016) 88, 43-55
Mathilde Hutin, Stella Césari, Véronique Chalvon, Corinne Michel, Tuan Tu Tran, Jens Boch, Ralf Koebnik, Boris Szurek and Thomas Kroj (2016)
Ectopic activation of the rice NLR heteropair RGA4/RGA5 confers resistance to bacterial blight and bacterial leaf streak diseases

Annual Review of Phytopathology (2016) 54, 163-187
Marie-Agnès Jacques, Matthieu Arlat, Alice Boulanger, Tristan Boureau, Sébastien Carrère, Sophie Cesbron, Nicolas W.G. Chen, Stéphane Cociancich, Armelle Darrasse, Nicolas Denancé, Marion Fischer-Le Saux, Lionel Gagnevin, Ralf Koebnik, Emmanuelle Lauber, Laurent D. Noël, Isabelle Pieretti, Perrine Portier, Olivier Pruvost, Adrien Rieux, Isabelle Robène, Monique Royer, Boris Szurek, Valérie Verdier and Christian Vernière (2016)
Using ecology, physiology, and genomics to understand host specificity in Xanthomonas

Plant Disease (2015) 99, p. 1853 (Tran et al.)
T.T. Tran, N.V. Nga, P.T. Ngan, N.T. Hong, B. Szurek, R. Koebnik, L.H. Ham, H.V. Cuong and S. Cunnac (2015)
Confirmation of bacterial leaf streak of rice caused by Xanthomonas oryzae pv. oryzicola in Vietnam

The Plant Journal (2015) 84, 694-703
Mathilde Hutin, François Sabot, Alain Ghesquière, Ralf Koebnik and Boris Szurek (2015)
A knowledge-based molecular screen uncovers a broad-spectrum OsSWEET14 resistance allele to bacterial blight from wild rice

Applied and Environmental Microbiology (2015) 81, 688-698
L. Poulin, P. Grygiel, M. Magne, L. Gagnevin, L.M. Rodriguez-R., N. Forero Serna, S. Zhao, M. El Rafii, S. Dao, C. Tekete, I. Wonni, O. Koita, O. Pruvost, V. Verdier, C. Vernière and R. Koebnik (2015)
New multilocus variable-number tandem-repeat analysis tool for surveillance and local epidemiology of bacterial leaf blight and bacterial leaf streak of rice caused by Xanthomonas oryzae

Plant Disease (2014) 98, p. 1423 (Poulin et al.)
L. Poulin, H. Raveloson, M. Sester, L.-M. Raboin, D. Silué, R. Koebnik and B. Szurek (2014)
Confirmation of bacterial leaf streak caused by Xanthomonas oryzae pv. oryzicola on rice in Madagascar

PLoS ONE (2014) 9 (6 - e98129)
Olivier Pruvost, Maxime Magne, Karine Boyer, Alice Leduc, Christophe Tourterel, Christine Drevet, Virginie Ravigné, Lionel Gagnevin, Fabien Guérin, Frédéric Chiroleu, Ralf Koebnik, Valérie Verdier and Christian Vernière (2014)
A MLVA genotyping scheme for global surveillance of the citrus pathogen Xanthomonas citri pv. citri suggests a worldwide geographical expansion of a single genetic lineage

Plant Disease (2014) 98, p. 1426 (Afolabi et al.)
O. Afolabi, B. Milan, R. Amoussa, R. Koebnik, L. Poulin, B. Szurek, G. Habarugira, J. Bigirimana and D. Silue (2014)
First report of Xanthomonas oryzae pv. oryzicola causing bacterial leaf streak of rice in Burundi

Plant Disease (2014) 98, p. 1579 (Afolabi et al.)
O. Afolabi, B. Milan, L. Poulin, J. Ongom, B. Szurek, R. Koebnik and D. Silue (2014)
First report of Xanthomonas oryzae pv. oryzicola causing bacterial leaf streak of rice in Uganda

Phytopathology (2014) 104, 520-531
I. Wonni, B. Cottyn, L. Detemmerman, S. Dao, L. Ouedraogo, S. Sarra, C. Tekete, S. Poussier, R. Corral, L. Triplett, O. Koita, R. Koebnik, J. Leach, B. Szurek, M. Maes and V. Verdier (2014)
Analysis of Xanthomonas oryzae pv. oryzicola population in Mali and Burkina Faso reveals a high level of genetic and pathogenic diversity

PLoS ONE (2013) 8 (7 - e68464)
Alvaro L. Pérez-Quintero, Luis M. Rodriguez-R, Alexis Dereeper, Camilo López, Ralf Koebnik, Boris Szurek and Sebastien Cunnac (2013)
An improved method for TAL effectors DNA-binding sites prediction reveals functional convergence in TAL repertoires of Xanthomonas oryzae strains

New Phytologist (2013) 200, 808-819
Jana Streubel, Céline Pesce, Mathilde Hutin, Ralf Koebnik, Jens Boch and Boris Szurek (2013)
Five phylogenetically close rice SWEET genes confer TAL effector-mediated susceptibility to Xanthomonas oryzae pv. oryzae

Molecular Plant Pathology (2013) 14, 84-95
Luisa F. Castiblanco, Juliana Gil, Alejandro Rojas, Daniela Osorio, Sonia Gutiérrez, Alejandra Muñoz-Bodnar, Alvaro L. Perez-Quintero, Ralf Koebnik, Boris Szurek, Camilo López, Silvia Restrepo, Valérie Verdier and Adriana J. Bernal (2013)
TALE1 from Xanthomonas axonopodis pv. manihotis acts as a transcriptional activator in plant cells and is important for pathogenicity in cassava plants

Phytopathology (2012) 102, 948-956
Shuai Zhao, Lucie Poulin, Luis M. Rodriguez-R., Natalia Forero Serna, Shu-Yan Liu, Issa Wonni, Boris Szurek, Valérie Verdier, Jan E. Leach, Yong-Qiang He, Jia-Xun Feng and Ralf Koebnik (2012)
Development of a variable number of tandem repeats typing scheme for the bacterial rice pathogen Xanthomonas oryzae pv. oryzicola

Molecular Plant Pathology (2012) 13, 288-302
Ahmed Hajri, Chrystelle Brin, Shuai Zhao, Perrine David, Jia-Xun Feng, Ralf Koebnik, Boris Szurek, Valérie Verdier, Tristan Boureau and Stephane Poussier (2012)
Multilocus sequence analysis and type III effector repertoire mining provide new insights into the evolutionary history and virulence of Xanthomonas oryzae

Molecular Plant-Microbe Interactions (2011) 24, 1102-1113
Yanhua Yu, Jana Streubel, Sandrine Balzergue, Antony Champion, Jens Boch, Ralf Koebnik, Jiaxun Feng, Valérie Verdier and Boris Szurek (2011)
Colonization of rice leaf blades by an African strain of Xanthomonas oryzae pv. oryzae depends on a new TAL effector that induces the rice nodulin-3 Os11N3 gene

Molecular Plant Pathology (2009) 10, 749-766
Frank F. White, Neha Potnis, Jeffrey B. Jones and Ralf Koebnik (2009)
The type III effectors of Xanthomonas

Molecular Plant-Microbe Interactions (2007) 20, 559-567
Ernst Weber, Carolin Berger, Ulla Bonas and Ralf Koebnik (2007)
Refinement of the Xanthomonas campestris pv. vesicatoria hrpD and hrpE operon structure